Happy mapping as an alternative to overcome the problems in coconut genome mapping
Keywords:
Coconut, Framework Map, Genome Mapping, Happy Mapping, Meiotic Mapping, Mapping Population, Polymorphic Marker and Segregation
Abstract
An excellent way of producing a reliable mapping population for quantitative trait loci analysis and marker assisted selection was considered. A physical mapping method known as ‘Happy Mapping’ was discussed to make a framework map as an alternative to overcome the problems associated with meiotic mapping.
References
Bandaranayake, C.K. 2002. Genome mapping of Arabidopsis thaliana and Cocos nucifera. PhD thesis. The University of Birmingham, UK, 227pp.
Bandaranayake, C.K. 2003. Investigation of the feasibility of constructing a map for coconut with several F2 families using computer-simulated data. Cord 19(1): 59-68.
Beavis, W.D. 1994. The power and deceit of QTL experiments: lessons from comparative QTL studies. In: Proceedings of the 49th Annual Corn and Sorghum Industry Research Conference, pp. 250-266. Chicago, American Seed Trade Association, Washington D.C.
Biunno, I., Bernard, L., Dear, P., Cattaneo, M., Volorio, S., Zannini, L., Bankier, A. and Zollo, M. 2000. SEL1L, the human homologue of C. elegans sel-1: refined physical mapping, gene structure and identification of polymorphic markers. Human Gen. 106: 227-235.
Cox, D.R., Burmeister, M., Price, E.R., Kim, S. and Myers, R.M. 1990. Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
Dear, P.H. and Cook, P.R. 1989. Happy mapping: a proposal for linkage mapping the human genome. Nucleic Acids Res. 17: 6795-6897.
Dear, P.H. and Cook, P.R. 1993. Happy mapping: linkage mapping using a physical analogue of meiosis. Nucleic Acids Res. 21: 13-20.
Dear, P.H., Bankier, A.T. and Piper, M.B. 1998. A high-resolution metric HAPPY map of human chromosome 14. Genomics 48: 232-241.
Herran, A., Estioko, L., Becker, D., Rodriguez, M.J.B., Rohde, W. and Ritter, E. 2000. Linkage mapping and QTL analysis in coconut (Cocos nucifera L.). Theor. App. Gen. 101: 292-300.
Lebrun, P., Baudouin, L., Bourdeix, R., Louis Konan, J., Barker, J.H.A., Aldam, C., Herran, A. and Ritter, E. 2001. Construction of a linkage map of the Rennell Island Tall coconut type (Cocos nucifera L.) and QTL analysis for yield characters. Genome 44: 962-970.
Piper, M.B., Bankier, A.T. and Dear, P.H. 1998. A HAPPY map of Cryptosporidium parvum. Genome Res. 8: 1299-1307.
Ritter, E., Rodriguez, M.J.B., Herran, A., Estioko, L., Becker, D. and Rohde, W. 2000. Analysis of quantitative trait loci (QTL) based on linkage maps in coconut (Cocos nucifera L.). pp. 42-48. In: Plant Genetic Engineering towards the Third Millennium, A. Arencibia (Ed.). Elsevier Science B. V. Amsterdam, The Netherlands.
Rohde, W., Becker, D., Kullaya, A., Rodriguez, M.J.B., Herran, A. and Ritter, E. 1999. Analysis of coconut germplasm biodiversity by DNA marker technologies and construction of a first genetic linkage map, pp. 99-120. In: Current Advances in Coconut Biotechnology, C. Oropeza, J.L. Verdeil, G.R. Ashburner, R. Cardega and J.M. Santamaria (Eds.). Kluwer Academic Publishers, Dordrecht, The Netherlands.
Walter, G., Tomlinson, I.M., Cook, G.P., Rabbits, T.H. and Dear, P.H. 1993. HAPPY mapping of a YAC reveals alternative haplotypes in the human immunoglobulin VH locus. Nucleic Acids Res. 21: 4524-4529.
Williams, J.G. and Firtel, R.A. 2000. HAPPY days for the Dictyostelium genome project. Genome Res. 10: 1658-1659.
Young, N.D. 1994. Constructing a plant genetic linkage map with DNA markers, pp. 39-57. In: DNA Based Markers in Plants, R.L. Phillips and I.K. Vasil (Eds.). Kluwer Academic Publishers, The Netherlands.
Bandaranayake, C.K. 2003. Investigation of the feasibility of constructing a map for coconut with several F2 families using computer-simulated data. Cord 19(1): 59-68.
Beavis, W.D. 1994. The power and deceit of QTL experiments: lessons from comparative QTL studies. In: Proceedings of the 49th Annual Corn and Sorghum Industry Research Conference, pp. 250-266. Chicago, American Seed Trade Association, Washington D.C.
Biunno, I., Bernard, L., Dear, P., Cattaneo, M., Volorio, S., Zannini, L., Bankier, A. and Zollo, M. 2000. SEL1L, the human homologue of C. elegans sel-1: refined physical mapping, gene structure and identification of polymorphic markers. Human Gen. 106: 227-235.
Cox, D.R., Burmeister, M., Price, E.R., Kim, S. and Myers, R.M. 1990. Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
Dear, P.H. and Cook, P.R. 1989. Happy mapping: a proposal for linkage mapping the human genome. Nucleic Acids Res. 17: 6795-6897.
Dear, P.H. and Cook, P.R. 1993. Happy mapping: linkage mapping using a physical analogue of meiosis. Nucleic Acids Res. 21: 13-20.
Dear, P.H., Bankier, A.T. and Piper, M.B. 1998. A high-resolution metric HAPPY map of human chromosome 14. Genomics 48: 232-241.
Herran, A., Estioko, L., Becker, D., Rodriguez, M.J.B., Rohde, W. and Ritter, E. 2000. Linkage mapping and QTL analysis in coconut (Cocos nucifera L.). Theor. App. Gen. 101: 292-300.
Lebrun, P., Baudouin, L., Bourdeix, R., Louis Konan, J., Barker, J.H.A., Aldam, C., Herran, A. and Ritter, E. 2001. Construction of a linkage map of the Rennell Island Tall coconut type (Cocos nucifera L.) and QTL analysis for yield characters. Genome 44: 962-970.
Piper, M.B., Bankier, A.T. and Dear, P.H. 1998. A HAPPY map of Cryptosporidium parvum. Genome Res. 8: 1299-1307.
Ritter, E., Rodriguez, M.J.B., Herran, A., Estioko, L., Becker, D. and Rohde, W. 2000. Analysis of quantitative trait loci (QTL) based on linkage maps in coconut (Cocos nucifera L.). pp. 42-48. In: Plant Genetic Engineering towards the Third Millennium, A. Arencibia (Ed.). Elsevier Science B. V. Amsterdam, The Netherlands.
Rohde, W., Becker, D., Kullaya, A., Rodriguez, M.J.B., Herran, A. and Ritter, E. 1999. Analysis of coconut germplasm biodiversity by DNA marker technologies and construction of a first genetic linkage map, pp. 99-120. In: Current Advances in Coconut Biotechnology, C. Oropeza, J.L. Verdeil, G.R. Ashburner, R. Cardega and J.M. Santamaria (Eds.). Kluwer Academic Publishers, Dordrecht, The Netherlands.
Walter, G., Tomlinson, I.M., Cook, G.P., Rabbits, T.H. and Dear, P.H. 1993. HAPPY mapping of a YAC reveals alternative haplotypes in the human immunoglobulin VH locus. Nucleic Acids Res. 21: 4524-4529.
Williams, J.G. and Firtel, R.A. 2000. HAPPY days for the Dictyostelium genome project. Genome Res. 10: 1658-1659.
Young, N.D. 1994. Constructing a plant genetic linkage map with DNA markers, pp. 39-57. In: DNA Based Markers in Plants, R.L. Phillips and I.K. Vasil (Eds.). Kluwer Academic Publishers, The Netherlands.
Published
2004-12-01
How to Cite
C.K. Bandaranayake. (2004). Happy mapping as an alternative to overcome the problems in coconut genome mapping. CORD, 20(02), 34. https://doi.org/10.37833/cord.v20i02.389
Section
Articles
