INVESTIGATION OF THE FEASIBILITY OF CONSTRUCTING A MAP FOR COCONUT WITH SEVERAL F2 FAMILIES USING COMPUTER-SIMULATED DATA
Keywords:
Breeding Coconuts, Construction of a Genetic Map
Abstract
A computer simulation was performed using RiceSim computer software to explore the practicability of combining several different F2 populations together through JoinMap to mimic the real available coconut mapping populations, and found that it was very successful. JoinMap would be able to map all 16 chromosomes which covered the map length of 1540 cM except for a single marker on chromosome 8. The largest marker interval was 32 cM at the bottom of chromosome 3 and all other markers were evenly distributed along the chromosomes maintaining the space around 12-30 cM between them.
References
CROSBY, J.L .1973. Computer Simulation in Genetics. John Wiley & Sons, London.
EDWARDS, M.D. and PAGE, N.J. 1994. Evaluation of marker assisted selection through computer simulation. Theor. Appl. Genet. 88: 376-382
HAUGE, B.M., HANLEY, S.M., CARTINHOUR, S., CHERRY, J.M. and GOODMAN, H.M. 1993. An integrated genetic /RFLP map of the Arabidopsis thaliana genome. The Plant J. 3 :745-754
LANDER, E.S., GREEN, P., ABRAHAMSON, J., BARLOW, A., DALY, M.J., LINCOLN, S.E. and NEWBURG, L. 1987. MAPMAKER: an interactive computer programme for constructing genetic linkage maps of experimental and natural populations. Genomics 1: 174
QI, X., STAM, P. and LINDHOUT, P. 1996. Comparison and integration of four barley genetic maps. Genome 39: 379-394
SAMPSON, J.R. 1984. Biological Information Processing: Current Theory and Computer Simulation. A. Wiley-Interscience Publications, John Wiley & Sons, New York.
SEBASTIAN, R.L., HOWELL, E.C., KING, G.J., MARSHALL, D.F. and KEARSEY, M.J. 2000. An integrated AFLP and RFLP Brassica oleracea linkage map from two morphologically distinct doubled-haploid mapping populations. Theor. Appl. Genet. 100:75-81
STAM, P. 1993. Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. The Plant J. 3: 739-744
EDWARDS, M.D. and PAGE, N.J. 1994. Evaluation of marker assisted selection through computer simulation. Theor. Appl. Genet. 88: 376-382
HAUGE, B.M., HANLEY, S.M., CARTINHOUR, S., CHERRY, J.M. and GOODMAN, H.M. 1993. An integrated genetic /RFLP map of the Arabidopsis thaliana genome. The Plant J. 3 :745-754
LANDER, E.S., GREEN, P., ABRAHAMSON, J., BARLOW, A., DALY, M.J., LINCOLN, S.E. and NEWBURG, L. 1987. MAPMAKER: an interactive computer programme for constructing genetic linkage maps of experimental and natural populations. Genomics 1: 174
QI, X., STAM, P. and LINDHOUT, P. 1996. Comparison and integration of four barley genetic maps. Genome 39: 379-394
SAMPSON, J.R. 1984. Biological Information Processing: Current Theory and Computer Simulation. A. Wiley-Interscience Publications, John Wiley & Sons, New York.
SEBASTIAN, R.L., HOWELL, E.C., KING, G.J., MARSHALL, D.F. and KEARSEY, M.J. 2000. An integrated AFLP and RFLP Brassica oleracea linkage map from two morphologically distinct doubled-haploid mapping populations. Theor. Appl. Genet. 100:75-81
STAM, P. 1993. Construction of integrated genetic linkage maps by means of a new computer package: JoinMap. The Plant J. 3: 739-744
Published
2003-06-01
How to Cite
C. K. Bandaranayake. (2003). INVESTIGATION OF THE FEASIBILITY OF CONSTRUCTING A MAP FOR COCONUT WITH SEVERAL F2 FAMILIES USING COMPUTER-SIMULATED DATA. CORD, 19(01), 34. https://doi.org/10.37833/cord.v19i01.370
Section
Articles
